Track A
Matthew R. Lakin and Sarika Kumar: Geometric enumeration of localized DNA strand displacement reaction networks
Erik D. Demaine, Timothy Gomez, Elise Grizzell, Markus Hecher, Jayson Lynch, Robert Schweller, Ahmed Shalaby and Damien Woods: Domain-Based Nucleic-Acid Minimum Free Energy: Algorithmic Hardness and Parameterized Bounds
Phillip Drake, Daniel Hader and Matthew Patitz: Simulation of the abstract Tile Assembly Model Using Crisscross Slats
Antti Elonen and Pekka Orponen: Designing 3D RNA origami nanostructures with a minimum number of kissing loops
Cameron Chalk, Salvador Buse, Krishna Shrinivas, Arvind Murugan and Erik Winfree: Learning and inference in a lattice model of many-component condensates
Track B
Paul Cunningham, Sara Ansteatt, Adam Meares, Sebastian Diaz, Young Kim, Igor Medintz and Joseph Melinger Dye: Dimer geometry control through linker length to DNA scaffold
Tianqi Song and Lulu Qian: Sustainable computation in heat powered DNA logic circuits and neural networks
Alexander Dack, Benjamin Qureshi, Thomas E. Ouldridge and Tomislav Plesa: Recurrent neural chemical reaction networks that approximate arbitrary dynamics
Anthony Vetturini, Jonathan Cagan and Rebecca Taylor: Design exploration of wireframe DNA origami through multiobjective optimization-driven generative design
Jordan Janowski, Van A.B. Pham, Simon Vecchioni, Natasha Jonoska and Ruojie Sha: Engineering tertiary chirality in helical biopolymers
Thong Diep, Hao Liu, Petr Sulc, Michael Matthies and Joshua Evans: DNA polycubes: A general 3D nanoscale assembly platform
Joshua Evans and Petr Sulc: Design and Simulation of Self-Assembling Systems with Signal-Passing Particles
Samuel Schaffter: Genetically encoded RNA strand exchange circuits for programmable protein expression and computation in bacteria
Heonjoon Lee, Samuel W. Schaffter and Rebecca Schulman: Designing modular and tunable protein biosensors using aptamer-regulated transcription
Bjorn Hogberg: An Autonomous Robotic Switch for Logic-gated Presentation of Cytotoxic Ligand Patterns in vivo
Constantine Evans, Jackson O’Brien, Erik Winfree and Arvind Murugan: Pattern recognition in the nucleation kinetics of non-equilibrium self-assembly
Ryan Krueger, Megan Engel, Ryan Hausen, Edward Hunter and Michael Brenner: Energy Functions as Policies
Hao Liu, Michael Matthies, Thong Diep, Hao Yan and Petr Sulc: Inverse design of DNA origami superlattices through model-driven experiments
Tiernan Kennedy, Thomas Mayer, Friedrich Simmel and Chris Thachuk: Systematic incorporation of non-natural base pairs for robust strand displacement in complex environments
Boya Wang, Cameron Chalk, David Doty and David Soloveichik: Molecular computation at equilibrium via programmable entropy
Salvador Buse and Erik Winfree: Developmental Pattern Formation in Neural Reaction-Diffusion Systems
Trent Rogers, Constantine Evans and Damien Woods: A 1D nanoscale printer: assembling DNA nanotubes of arbitrary and precise length from a fixed DNA tile set
Track C
Andrea Bardales, Quynh Vo and Dmitry Kolpashchikov: YES and NOT: a binary system that achieved universal Boolean logic in DNA molecular circuits
Aura Cencini, Alessandro Cecconello and Fabio Vianello: Hybrid DNA-RNA Triplexes as Actuators of Transcription Switches
Eladio Andujar Lugo and Rebecca E. Taylor: Semi-automated Design of XNA-DNA Nanostructures with Arbitrary Helicity
Taryn Imamura, Sarah Bergbreiter and Rebecca E. Taylor: Flexible DNA Linkers for Colloidal Microswimmer Swarms
Perumal Devanathan, Qi Yang, Maciej Jeziorek, Jung Yeon Lee, Jean-Pierre Etchegaray and Fei Zhang: Guided Self-Assembly of DNA Tiles into One- and Two-Dimensional Patterns Using Strand-Displacement and Optochemical Pathways
Alexander Swett, Seongmin Seo, Ruixin Li, Anirudh Madhvacharyula, Yancheng Du, Markus Eder, Friedrich Simmel and Jong Hyun Choi: A Deployable Nanostructure Made of Wireframe DNA Origami
Xu Chang and Fei Zhang: Reconfigurable DNA Nanocage for Protein Encapsulation and Regulation
Qi Yang, Xu Chang and Fei Zhang: Angle-Controllable RNA Tiles for Programable Array Assembly and RNA Sensing
Eli Kengmana, Elysse Ornelas-Gatdula, Kuan-Lin Chen and Rebecca Schulman: Spatial Control over Reactions via Localized Transcription within Membraneless DNA Nanostar Droplets
Michael Tobiason, Bernard Yurke and William Hughes: Generation of DNA oligomers with similar chemical kinetics via in-silico optimization
David Fernandez Bonet: Quantifying Spatial Coherence in DNA Barcode Networks
Simon K. Dahlberg, David Fernandez Bonet, Lovisa Franzén, Patrik L. Ståhl and Ian T. Hoffecker: Hidden network preserved in Slide-tags data allows reference-free spatial reconstruction
Yanqi Jiang, Alison Grinthal and Rebecca Schulman: Programmable dynamic self-assembled DNA nanostructures as polymerization motors
Curt LaRock, Paul Sorensen, Douglas Blair, Dabrien Murphy, James O’Connor and Steven Armentrout: inSēquio: A Programmable 3D CAD Application for Designing DNA Nanostructures
Chenwei Zhang, Jordan Lovrod, Boyan Beronov, Khanh Dao Duc and Anne Condon: Deciphering DNA Strand Displacement Mechanisms through Deep Graph Embeddings
Drew Lysne, Green Christopher, Deborah Sementa, Joseph Melinger, Isabella Tiboni, Angelica Galvan, Igor Medintz, Rein Ulijn and Sebastian Diaz: DNA sequestration into peptide liquid-liquid coacervates: Applications in biosensing, nuclease resistance, and computing
Nathan Edmondson, Burhan Gokalp, Aaron Colon, Daniel Malatesta, Sam Correll, Mark Arnold and Mayuresh Kothare: DNA Sticker Computation via Electrowetting and Electromagnetic Drop Manipulation
Drew Lysne, Sebastian Diaz, Chris Green, Timothy Hachigian, Chris Thachuk, Jeunghoon Lee and Elton Graugnard: The Influence of Steric Hindrance in Nanotechnological Devices and Processes
Damilola Fapohunda, Emily Helm, Samuel Schaffter and Rebecca Schulman: Determining Enzyme Rate Constants for Use in a Resettable RNA Strand Displacement Circuit
Divita Mathur, Angelica Rose Galvan, Christopher Green, Shelby Hooe, Esra Oktay, Meghna Thakur, Sebastian Diaz, Remi Veneziano and Igor Medintz: Cell free protein expression from a gene-encoded DNA nanoparticle
Mahdi Dizani, Daniela Sorrentino, Siddharth Agarwal, Jaimie Stewart and Elisa Franco: Protein recruitment to dynamic DNA-RNA host condensates
Jinsu Kim and Sunghwa Kang: Noise-robust neural network trained by chemical reactions
Rana Abdul Razzak, Jonathan Bath, Thomas Wilks, Rachel O’Reilly and Andrew Turberfield: An Architecture for DNA-Templated Synthesis Designed as the Core of a Synthetic Ribosome
Kazumo Takahashi, Ibuki Kawamata, Keita Abe, Hideaki Matsubayashi, Shin-Ichiro Nomura and Satoshi Murata: Implementation of DNA oscillator to artificial cells for inter-cellular information processing
Hiroaki Ohno, Takuya Mabuchi, Yosuke Ochi, Junichi Taira and Yusuke Sato: DNA condensate formation promoted or inhibited by oligolysine
Byunghwa Kang, Heonjoon Lee and Rebecca Schulman: Acceleration of catalytic kinetics driven by phase-separated far-from-equilibrium conditions
Daichi Nakajima, Shiva Razavi, Hideki Nakamura, Keita Abe, Satoshi Murata, Shin-Ichiro M. Nomura, Takanari Inoue and Hideaki Matsubayashi: Programming Actin Cytoskeleton in Synthetic Protocells Using Light and DNA Signals
Jie Yi Yea: Programmable mechanosensitive soft materials
Tracy Mallette and Chris Thachuk: Conditional release of chemically modified oligonucleotides without kinetic compromise
Yixuan Lee and Ho-Lin Chen: Simulation Power of Freezing Surface Chemical Reaction Networks
Shin Watanabe and Yuki Suzuki: Signal-guided assembly of DNA origami bending actuator into catenated architectures
Yuri Kobayashi and Yuki Suzuki: Multi-reconfiguration of DNA origami lattice actuator guided by a combination of external cues
Keita Abe and Satoshi Murata: Hydrogel cubes for building DNA-based reaction-diffusion system
Sreelakshmi Meppat and Shelley Wickham: Barrel-encapsulated DNA Nanopores with independent control of membrane docking and transport
Janet Adio, Abeer Eshra and Damien Woods: Scaling up a thermodynamically-favoured Scaffolded DNA Computer
Jacob Majikes, Ruohong Shi, Ryan Evans and Arvind Balijepalli: Reversible Signal Amplifier for Strand Displacement via Electrochemical Impedance Spectroscopy
Yancheng Du, Lulu Qian and Erik Winfree: Liquid-Liquid Phase Separation of Sixteen Orthogonal DNA Nanostars
Heather Romero Mercieca, Dino Osmanovic and Elisa Franco: Multicomponent DNA condensates
Dong Woo Kim and Rebecca Schulman: Spatial control of colloidal structure formation via localized chemical gradients
Dong Woo Kim and Rebecca Schulman: Enhancing the limit of detection of aptamer-based biosensors via advection
Jake Kaslewicz and Marc Riedel: Random Access DNA Registers
Emily Helm, Samuel Schaffter, Rebecca Schulman and Damilola Fapohunda: Coupled transcription and degradation enable self-resettable logic circuits that repeatedly respond to temporal signals
Rajiv Teja Nagipogu and John Reif: Leak-resilient Nucleic Acid Dynamical Systems through an Improved Shadow Cancellation Methodology
Julian Bauer, Tim Schröder, Patrick Schüler and Philip Tinnefeld: Redefining DNA Computing: Logic Operations Beyond Strand Displacement Reactions
Henry Wisniewski, Perumal Devanathan and Fei Zhang: A Dynamic and Controllable DNA Hoberman Ring
Kim Calabrese, David Doty and Mina Latifi: Rate-independent Boolean Predicate Computation in Continuous Chemical reaction networks
Minu Saji, Qi Yang, Perumal Devanathan and Fei Zhang: Hydrophobicity driven controlled higher order assembly of hybrid DNA nanostructures
Hong Kang, Yuexuan Yang and Bryan Wei: Synthetic molecular switches driven by DNA-modifying enzymes
Kellen Rodriguez, Tracy Mallette and Chris Thachuk: Enzymatic Synthesis of DNA Gates with Arbitrary Secondary Structure
Tiffany Olivera, Qi Yang and Fei Zhang: Programmable Rotary Nanomachine: A Functionalized DNA Origami Nanoclock
Josh Petrack and David Doty: Toward Efficient Simulation of Stochastic Chemical Reaction Networks
Jung Yeon Lee, Qi Yang, Xu Chang and Fei Zhang: The Systematic Study of Parallel Crossover Origami Systems and Comparison with Antiparallel Counterparts
Shiming Liu, Qiaochu Zhang and Jinglin Fu: Nucleic Acids Biosensing by “C-Ag-C” Complex/Urease Assay in A Colorimetric Reaction
Taichi Hirano, Hiromu Akai, Yusuke Sato, Kan Shoji and Takuya Mabuchi: Analysis of Ion Transport Properties in Artificial DNA Channels Modified with Internal Functional Groups by Molecular Dynamics Simulations
Ozra Mohammadi and Amy Stevens: Small Angle X-ray Scattering of 3D nanotube vs 2D sheet DNA origami
Constantine Evans, Jackson O’Brien, Damien Woods, Erik Winfree and Arvind Murugan: How pattern geometry controls nucleation kinetics
Daria Buka and David Doty: Efficient Probability 1 Turing-Universal Computation with Chemical Reaction Networks
Hannah Earley and Austin Luchsinger: Reversible Molecular Programming with Diamonds, Butterflies, Fans, and Urchins
Evelyn Roberts and David Doty: Limits on entropic bias in the 2D tile displacement model
Zoe Derauf and Chris Thachuk: Leakless, reconfigurable strand displacement architectures
Kanta Takagi, Tomoya Maruyama and Masahiro Takinoue: Computational DNA Droplets Generating Hydrodynamic Forces
Yusuke Sakai: Directional Graph Modelling for Solution Design and Experiment Automation
Colin Yancey and Rebecca Schulman: Quantifying 3’-end transcription reactions facilitated by T7 RNA Polymerase
Jordan Lovrod, Boyan Beronov and Anne Condon: Approximating DNA reaction kinetics with Markov state models: A first exploration
Kim Calabrese and David Doty: Rate-independent continuous inhibitory chemical reaction networks are Turing-universal
Matthew Sample, Hao Liu, Thong Diep, Joshua Evans and Petr Sulc: Multi-component DNA Origami Superstructure Multimerization Interface Optimization
Laurenz Miksch and Stefan Badelt: Domain-level design of pseudoknot-free cotranscriptional folding pathways
Ankita Murthy and Karthik Raman: An O(sqrt{2^n}) Volume DNA Computing Algorithm for the Subset Sum Problem